Thursday, January 07, 2010
I can haz a chemical simulator?
Now available, our journal paper, Reaction Factoring and Bipartite Update Graphs Accelerate the Gillespie Algorithm for Large-Scale Biochemical Systems, on the fabulous new stochastic chemical simulation method named... LOLCAT (thank you Sagar :-). Seriously, this method is excellent for anybody wanting to do exact simulation of complex chemical systems, as it drastically reduces the cost of simulation. Moreover, all of the code is available online at http://hdl.handle.net/1721.1/46710